Assessment of microbial community structure changes by amplified ribosomal DNA restriction analysis (ARDRA) Authors Frederic B. Gich Laboratory of Microbiology, Institute of Aquatic Ecology, University of Girona, Spain Estefania Amer Laboratory of Engineering and Environmental Chemistry, University of Girona, Spain Jordi B. Figueras Laboratory of Microbiology, Institute of Aquatic Ecology, University of Girona, Spain; and Institute of Biochemistry, Syddasnsk Universitet-Odense Universitet, Odense, Denmark Charles A. Abella Charles A. Abella Laboratory of Microbiology, Institute of Aquatic Ecology, University of Girona, Spain M. Dolors Balaguer Manel Poch Laboratory of Engineering and Environmental Chemistry, University of Girona, Spain Keywords: Amplified ribosomal DNA restriction analysis (ARDRA), wastewater treatment plants (WWTPs), 16S ribosomal DNA, activated sludge, dice similarity coefficient Abstract Amplified ribosomal DNA restriction analysis (ARDRA) is a simple method based on restriction endonuclease digestion of the amplified bacterial 16S rDNA. In this study we have evaluated the suitability of this method to detect differences in activated sludge bacterial communities fed on domestic or industrial wastewater, and subject to different operational conditions. The ability of ARDRA to detect these differences has been tested in modified Ludzack-Ettinger (MLE) configurations. Samples from three activated sludge wastewater treatment plants (WWTPs) with the MLE configuration were collected for both oxic and anoxic reactors, and ARDRA patterns using double enzyme digestions AluI+MspI were obtained. A matrix of Dice similarity coefficients was calculated and used to compare these restriction patterns. Differences in the community structure due to influent characteristics and temperature could be observed, but not between the oxic and anoxic reactors of each of the three MLE configurations. Other possible applications of ARDRA for detecting and monitoring changes in activated sludge systems are also discussed. Downloads PDF Published 2010-03-15 Issue Vol. 3 No. 2 (2000) Section Research Articles License Submission of a manuscript to International Microbiology implies: that the work described has not been published before, including publication in the World Wide Web (except in the form of an Abstract or as part of a published lecture, review, or thesis); that it is not under consideration for publication elsewhere; that all the coauthors have agreed to its publication. The corresponding author signs for and accepts responsability for releasing this material and will act on behalf of any and all coauthors regarding the editorial review and publication process.If an article is accepted for publication in International Microbiology, the authors (or other copyright holder) must transfer to the journal the right–not exclusive–to reproduce and distribute the article including reprints, translations, photographic reproductions, microform, electronic form (offline, online) or any other reproductions of similar nature. Nevertheless, all article in International Microbiology will be available on the Internet to any reader at no cost. The journal allows users to freely download, copy, print, distribute, search, and link to the full text of any article, provided the authorship and source of the published article is cited. The copyright owner's consent does not include copying for new works, or resale. In these cases, the specific written permission of International Microbiology must first be obtained.Authors are requested to create a link to the published article on the journal's website. The link must be accompanied by the following text: "The original publication is available on LINK at <http://www.im.microbios.org>. Please use the appropiate URL for the article in LINK. Articles disseminated via LINK are indexed, abstracted, and referenced by many abstracting and information services, bibliographic networks, subscription agencies, library networks, and consortia.
